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Research Ontologist

Category:  Research
Location: 

Måløv, Capital Region of Denmark, DK

   

Are you passionate about data and the relationship between concepts? Then, maybe you are the one we are looking for. The Data Integration & Ontologies department at Novo Nordisk is looking for a Research Ontologist with strong communication and leadership skills to support our data management initiative.

 

About the department

The newly established department of Data Integration & Ontologies aims at digitization of data from early research. With FAIR principles as the foundation, the department aims at simplifying the process of data capture using semantic models to establish interoperability across data sets from pre-clinical research. The long-term vision of the department is to create a digital mindset by driving the adoption of FAIR principles across the pipeline. This department plays a key role in the intersection between research scientists, application developers and data modelers. The team will act as a liaison among these groups to ensure the quality and consistency of data being generated while showcasing strong gains from analytics models using clean data.

 

As a Research Ontologist, you will have the exciting opportunity to drive the adoption of standardized vocabularies and ontologies thereby ensuring semantic interoperability across the early research pipeline.  

 

About the position

The Research Ontologist will be responsible for the creation/ update of controlled vocabularies, taxonomies and ontologies for a specific domain with emphasis on sharing these across the company to maintain business standards for data. Since this data could be subject to regulatory guidelines, the incumbent is expected to collaborate across multiple functions to identify the best fit semantic models that suit the needs of the organisation. Job responsibilities include but are not limited to the following:

 

  • Develop customized ontologies/semantic models and standards by identifying and enriching existing public ontologies that suit the business needs using semantic web technologies
  • Interact with domain experts and data scientists to develop guidelines for ontology identification, enrichment and integration with existing systems.
  • Ensure data integrity and quality within the Ontology Management Systems after upgrades and patches.
  • Develop a review and governance system to enable easy request for ontology enrichment and or changes to suit the business needs.
  • Communicate the status of the ontology enrichment and integration along with milestones, key achievements and roadblocks if any with stakeholders and leadership on a regular basis.
  • Popularise the use of controlled vocabularies, ontologies and data management best practices through trainings and workshops.
     

Qualifications & Experience

You hold a PhD in life sciences or a related field, with a 3-5 years post-PhD experience in semantic technologies, ontology engineering, ontology curation and data management. Knowledge of semantic web standards such as RDF, SKOS, OWL, OBO coupled with a solid understanding of Natural Language Processing, including NER, concept modelling, and entity resolution
 

The ideal candidate will have experience with:

  • Biomedical ontologies, vocabularies and taxonomies, such as MeSH, SNOMED, ICD9/10, MedDRA, CDISC etc. along with experience in validating and querying semantic models using SHACL/SPARQL
  • Terminology management and classification tools, such as Smartlogic – Semaphore, SciBite – CENtree, Semantic Web Company – PoolParty, Cambridge Semantics – Anzo, TopQuadrant – TopBraid etc
  • Knowledge of data format standards, including industry standards (e.g. XMI for interchange of XML), as well as database management systems (e.g. SQL Server, Oracle, NoSQL, MarkLogic)

 

Contact

For further information, please contact Saritha Vettikunnel Kuriakose +45 30 77 59 62

 

Interviews are on an ongoing basis.

 

Millions rely on us
To work for Novo Nordisk you will need the skills, dedication and ambition to change lives for the better for millions of patients living with diabetes and other chronical diseases. In exchange, we offer the chance to be part of a truly global workplace, where passion and engagement are met with opportunities for professional and personal development.